PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_05794
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 260aa    MW: 28863.6 Da    PI: 7.1494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_05794genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-202979155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++y+GVr++  +g+WvAeIr+p++   r r++lg+f taeeAa a++ a+++l+g
  PEQU_05794 29 CDYRGVRQRT-WGKWVAEIREPKK---RSRIWLGSFSTAEEAALAYDDAARRLYG 79
                68*****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.4E-132979IPR001471AP2/ERF domain
CDDcd000186.95E-302989No hitNo description
SMARTSM003801.0E-353093IPR001471AP2/ERF domain
PROSITE profilePS5103222.513087IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-213188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-303188IPR001471AP2/ERF domain
PRINTSPR003671.2E-103142IPR001471AP2/ERF domain
PRINTSPR003671.2E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDNLLRRPPP RPWKKGPSRG KGGPLNSSCD YRGVRQRTWG KWVAEIREPK KRSRIWLGSF  60
STAEEAALAY DDAARRLYGP EAYLNLPHLR ALPCSSSSLS NSKPFSRHRF LRWLPVSAAA  120
SRPLLNLTAQ HSVHSIHQRL EEIKKRGGSG GGGGGGGGSV SKVQYEERPQ IDLREFLEQM  180
GVIKEKEKVV EEAMEREEKG EEISDGGELV NWDELEEIRA FEEHAAAAAV VGGAGGGFQL  240
PLYLDVDEEI SSLPIPIWDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-183187663ATERF1
3gcc_A9e-183187663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148158SGGGGGGGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940962.15e-79PREDICTED: dehydration-responsive element-binding protein 2E-like
SwissprotQ9SVX56e-57DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A059DI322e-73A0A059DI32_EUCGR; Uncharacterized protein
TrEMBLA0A0K9RUZ41e-73A0A0K9RUZ4_SPIOL; Uncharacterized protein
STRINGGLYMA02G31350.12e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95752939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.12e-30ERF family protein